Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 VN2R19P-201ENST00000442399 1052 ntBASIC17.71■□□□□ 0.43
SLC6A4P31645 PAWRP1-201ENST00000451083 565 ntBASIC17.71■□□□□ 0.43
SLC6A4P31645 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.71■□□□□ 0.43
SLC6A4P31645 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.71■□□□□ 0.43
SLC6A4P31645 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.71■□□□□ 0.43
SLC6A4P31645 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.71■□□□□ 0.43
SLC6A4P31645 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.71■□□□□ 0.43
SLC6A4P31645 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.71■□□□□ 0.43
SLC6A4P31645 GGTLC5P-201ENST00000617623 998 ntBASIC17.71■□□□□ 0.43
SLC6A4P31645 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
SLC6A4P31645 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SLC6A4P31645 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SLC6A4P31645 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SLC6A4P31645 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SLC6A4P31645 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.71■□□□□ 0.42
SLC6A4P31645 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.71■□□□□ 0.42
SLC6A4P31645 AC116353.5-201ENST00000638148 1699 ntBASIC17.71■□□□□ 0.42
SLC6A4P31645 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SLC6A4P31645 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SLC6A4P31645 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SLC6A4P31645 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SLC6A4P31645 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.7■□□□□ 0.42
SLC6A4P31645 IGLL3P-201ENST00000412472 434 ntBASIC17.7■□□□□ 0.42
SLC6A4P31645 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.7■□□□□ 0.42
SLC6A4P31645 PRSS29P-201ENST00000440800 595 ntBASIC17.7■□□□□ 0.42
SLC6A4P31645 HCG4B-203ENST00000450128 991 ntBASIC17.7■□□□□ 0.42
SLC6A4P31645 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.7■□□□□ 0.42
SLC6A4P31645 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.7■□□□□ 0.42
SLC6A4P31645 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SLC6A4P31645 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.7■□□□□ 0.42
SLC6A4P31645 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.7■□□□□ 0.42
SLC6A4P31645 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
SLC6A4P31645 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC6A4P31645 AC093525.9-201ENST00000624961 1746 ntBASIC17.69■□□□□ 0.42
SLC6A4P31645 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC6A4P31645 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SLC6A4P31645 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SLC6A4P31645 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC6A4P31645 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.69■□□□□ 0.42
SLC6A4P31645 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC6A4P31645 AC010654.1-201ENST00000615722 808 ntBASIC17.69■□□□□ 0.42
SLC6A4P31645 AC023511.2-201ENST00000618803 211 ntBASIC17.69■□□□□ 0.42
SLC6A4P31645 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC6A4P31645 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SLC6A4P31645 AC005332.8-201ENST00000622750 2735 ntBASIC17.69■□□□□ 0.42
SLC6A4P31645 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC6A4P31645 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SLC6A4P31645 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SLC6A4P31645 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SLC6A4P31645 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SLC6A4P31645 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC6A4P31645 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC6A4P31645 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC6A4P31645 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.68■□□□□ 0.42
SLC6A4P31645 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC6A4P31645 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SLC6A4P31645 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC6A4P31645 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC6A4P31645 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC6A4P31645 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
SLC6A4P31645 SLC25A6P2-201ENST00000497974 877 ntBASIC17.68■□□□□ 0.42
SLC6A4P31645 RNA5SP416-201ENST00000516838 111 ntBASIC17.68■□□□□ 0.42
SLC6A4P31645 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC6A4P31645 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
SLC6A4P31645 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC6A4P31645 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC6A4P31645 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SLC6A4P31645 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC6A4P31645 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.68■□□□□ 0.42
SLC6A4P31645 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SLC6A4P31645 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC6A4P31645 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
SLC6A4P31645 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC6A4P31645 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC6A4P31645 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms