Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.41■□□□□ 0.38
PTPN4P29074 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PTPN4P29074 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
PTPN4P29074 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
PTPN4P29074 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PTPN4P29074 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.41■□□□□ 0.38
PTPN4P29074 RNF126P1-202ENST00000569893 925 ntBASIC17.41■□□□□ 0.38
PTPN4P29074 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.41■□□□□ 0.38
PTPN4P29074 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.41■□□□□ 0.38
PTPN4P29074 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.41■□□□□ 0.38
PTPN4P29074 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PTPN4P29074 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 AL513477.1-201ENST00000602865 2407 ntBASIC17.41■□□□□ 0.38
PTPN4P29074 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PTPN4P29074 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
PTPN4P29074 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PTPN4P29074 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
PTPN4P29074 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 PVRIG2P-201ENST00000435460 978 ntBASIC17.4■□□□□ 0.38
PTPN4P29074 NUS1P1-201ENST00000446295 882 ntBASIC17.4■□□□□ 0.38
PTPN4P29074 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.4■□□□□ 0.38
PTPN4P29074 AC111152.3-201ENST00000569699 673 ntBASIC17.4■□□□□ 0.38
PTPN4P29074 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.4■□□□□ 0.38
PTPN4P29074 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.4■□□□□ 0.38
PTPN4P29074 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.4■□□□□ 0.38
PTPN4P29074 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 AC026691.1-201ENST00000602502 2017 ntBASIC17.4■□□□□ 0.38
PTPN4P29074 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN4P29074 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PTPN4P29074 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PTPN4P29074 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.39■□□□□ 0.38
PTPN4P29074 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
PTPN4P29074 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
PTPN4P29074 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 AC009102.3-201ENST00000623118 1491 ntBASIC17.39■□□□□ 0.37
PTPN4P29074 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 AC060834.1-201ENST00000443027 2032 ntBASIC17.39■□□□□ 0.37
PTPN4P29074 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.39■□□□□ 0.37
PTPN4P29074 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.39■□□□□ 0.37
PTPN4P29074 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 AP003733.1-201ENST00000491725 852 ntBASIC17.39■□□□□ 0.37
PTPN4P29074 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms