Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 NMU-205ENST00000511469 756 ntTSL 3 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 METTL23-204ENST00000586752 904 ntTSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 AC116407.4-201ENST00000623319 1061 ntBASIC13.22□□□□□ -0.29
HLA-DMBP28068 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 SLC25A1P3-201ENST00000395415 828 ntBASIC13.21□□□□□ -0.29
HLA-DMBP28068 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 PTK2-216ENST00000519881 863 ntTSL 3 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 AC109462.3-201ENST00000573934 613 ntBASIC13.21□□□□□ -0.29
HLA-DMBP28068 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 AC069148.1-201ENST00000608741 768 ntBASIC13.21□□□□□ -0.29
HLA-DMBP28068 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DMBP28068 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
HLA-DMBP28068 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
HLA-DMBP28068 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.3
HLA-DMBP28068 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HLA-DMBP28068 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HLA-DMBP28068 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
HLA-DMBP28068 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
HLA-DMBP28068 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
HLA-DMBP28068 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
HLA-DMBP28068 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.21□□□□□ -0.3
HLA-DMBP28068 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 PCDHA14-201ENST00000506751 2298 ntBASIC13.2□□□□□ -0.3
HLA-DMBP28068 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 FLJ38576-201ENST00000623820 2459 ntBASIC13.2□□□□□ -0.3
HLA-DMBP28068 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 COX5BP2-201ENST00000392354 334 ntBASIC13.2□□□□□ -0.3
HLA-DMBP28068 AL645929.1-201ENST00000420084 975 ntBASIC13.2□□□□□ -0.3
HLA-DMBP28068 AC007967.3-201ENST00000434308 558 ntBASIC13.2□□□□□ -0.3
HLA-DMBP28068 CNP-204ENST00000472031 1019 ntTSL 2 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms