Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP1O15259 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
NPHP1O15259 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.76■■□□□ 1.07
NPHP1O15259 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
NPHP1O15259 AL513210.1-201ENST00000629608 234 ntBASIC21.76■■□□□ 1.07
NPHP1O15259 AC092902.6-201ENST00000641783 218 ntBASIC21.76■■□□□ 1.07
NPHP1O15259 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
NPHP1O15259 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.76■■□□□ 1.07
NPHP1O15259 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.76■■□□□ 1.07
NPHP1O15259 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP1O15259 CROCCP3-202ENST00000420820 1947 ntBASIC21.76■■□□□ 1.07
NPHP1O15259 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.76■■□□□ 1.07
NPHP1O15259 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP1O15259 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.76■■□□□ 1.07
NPHP1O15259 AC135776.1-201ENST00000319817 2481 ntBASIC21.75■■□□□ 1.07
NPHP1O15259 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.75■■□□□ 1.07
NPHP1O15259 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 AC093677.2-201ENST00000600169 1863 ntBASIC21.75■■□□□ 1.07
NPHP1O15259 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 AC092474.2-201ENST00000424288 719 ntBASIC21.75■■□□□ 1.07
NPHP1O15259 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.75■■□□□ 1.07
NPHP1O15259 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC21.75■■□□□ 1.07
NPHP1O15259 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP1O15259 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.75■■□□□ 1.07
NPHP1O15259 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP1O15259 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
NPHP1O15259 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP1O15259 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP1O15259 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
NPHP1O15259 REXO1L9P-201ENST00000604264 2108 ntBASIC21.74■■□□□ 1.07
NPHP1O15259 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
NPHP1O15259 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC21.74■■□□□ 1.07
NPHP1O15259 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
NPHP1O15259 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP1O15259 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP1O15259 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
NPHP1O15259 REXO1L3P-201ENST00000622202 1288 ntBASIC21.74■■□□□ 1.07
NPHP1O15259 AC105339.1-204ENST00000636249 355 ntBASIC21.74■■□□□ 1.07
NPHP1O15259 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 AC005332.8-201ENST00000622750 2735 ntBASIC21.74■■□□□ 1.07
NPHP1O15259 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP1O15259 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP1O15259 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP1O15259 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP1O15259 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP1O15259 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
NPHP1O15259 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 NABP1-203ENST00000409510 843 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP1O15259 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC21.73■■□□□ 1.07
NPHP1O15259 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
NPHP1O15259 FAM86GP-201ENST00000448322 971 ntBASIC21.73■■□□□ 1.07
NPHP1O15259 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 AC112191.1-201ENST00000523689 701 ntBASIC21.73■■□□□ 1.07
NPHP1O15259 CFL1-212ENST00000531413 636 ntTSL 3 BASIC21.73■■□□□ 1.07
NPHP1O15259 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC21.73■■□□□ 1.07
NPHP1O15259 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP1O15259 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP1O15259 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC21.73■■□□□ 1.07
NPHP1O15259 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
NPHP1O15259 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP1O15259 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP1O15259 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP1O15259 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP1O15259 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP1O15259 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP1O15259 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP1O15259 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP1O15259 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
NPHP1O15259 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms