Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.79■□□□□ 0.28
UBFD1O14562 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.79■□□□□ 0.28
UBFD1O14562 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.79■□□□□ 0.28
UBFD1O14562 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.79■□□□□ 0.28
UBFD1O14562 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.79■□□□□ 0.28
UBFD1O14562 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.79■□□□□ 0.28
UBFD1O14562 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
UBFD1O14562 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.79■□□□□ 0.28
UBFD1O14562 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.79■□□□□ 0.28
UBFD1O14562 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
UBFD1O14562 AD001527.2-201ENST00000622994 785 ntBASIC16.79■□□□□ 0.28
UBFD1O14562 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
UBFD1O14562 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.79■□□□□ 0.28
UBFD1O14562 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
UBFD1O14562 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.78■□□□□ 0.28
UBFD1O14562 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
UBFD1O14562 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.78■□□□□ 0.28
UBFD1O14562 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
UBFD1O14562 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
UBFD1O14562 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.78■□□□□ 0.28
UBFD1O14562 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.78■□□□□ 0.28
UBFD1O14562 AC246785.2-201ENST00000432512 513 ntBASIC16.78■□□□□ 0.28
UBFD1O14562 STK19B-204ENST00000512515 211 ntBASIC16.78■□□□□ 0.28
UBFD1O14562 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.78■□□□□ 0.28
UBFD1O14562 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
UBFD1O14562 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.78■□□□□ 0.28
UBFD1O14562 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.78■□□□□ 0.28
UBFD1O14562 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
UBFD1O14562 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.78■□□□□ 0.28
UBFD1O14562 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UBFD1O14562 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.77■□□□□ 0.28
UBFD1O14562 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.77■□□□□ 0.28
UBFD1O14562 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
UBFD1O14562 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
UBFD1O14562 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
UBFD1O14562 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
UBFD1O14562 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
UBFD1O14562 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
UBFD1O14562 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
UBFD1O14562 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
UBFD1O14562 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.77■□□□□ 0.28
UBFD1O14562 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
UBFD1O14562 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
UBFD1O14562 AL031133.1-201ENST00000406807 723 ntBASIC16.77■□□□□ 0.28
UBFD1O14562 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.77■□□□□ 0.28
UBFD1O14562 AC009533.2-201ENST00000543664 586 ntBASIC16.77■□□□□ 0.28
UBFD1O14562 LINC01238-205ENST00000567549 1107 ntBASIC16.77■□□□□ 0.28
UBFD1O14562 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.77■□□□□ 0.28
UBFD1O14562 AC011467.2-201ENST00000598425 242 ntBASIC16.77■□□□□ 0.28
UBFD1O14562 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.77■□□□□ 0.28
UBFD1O14562 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
UBFD1O14562 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.77■□□□□ 0.27
UBFD1O14562 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.77■□□□□ 0.27
UBFD1O14562 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
UBFD1O14562 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
UBFD1O14562 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
UBFD1O14562 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
UBFD1O14562 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
UBFD1O14562 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.27
UBFD1O14562 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.77■□□□□ 0.27
UBFD1O14562 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.77■□□□□ 0.27
UBFD1O14562 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
UBFD1O14562 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
UBFD1O14562 AC016734.2-201ENST00000624325 1377 ntBASIC16.77■□□□□ 0.27
UBFD1O14562 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
UBFD1O14562 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
UBFD1O14562 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
UBFD1O14562 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
UBFD1O14562 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
UBFD1O14562 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.76■□□□□ 0.27
UBFD1O14562 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms