Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM38O00635 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM38O00635 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TRIM38O00635 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM38O00635 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM38O00635 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRIM38O00635 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM38O00635 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM38O00635 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM38O00635 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TRIM38O00635 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TRIM38O00635 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM38O00635 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.44■□□□□ 0.38
TRIM38O00635 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
TRIM38O00635 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM38O00635 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.44■□□□□ 0.38
TRIM38O00635 PGAM5P1-201ENST00000518923 814 ntBASIC17.44■□□□□ 0.38
TRIM38O00635 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.44■□□□□ 0.38
TRIM38O00635 NKAPP1-205ENST00000585790 367 ntBASIC17.44■□□□□ 0.38
TRIM38O00635 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM38O00635 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM38O00635 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
TRIM38O00635 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM38O00635 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM38O00635 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM38O00635 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM38O00635 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM38O00635 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
TRIM38O00635 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM38O00635 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM38O00635 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRIM38O00635 AC098831.1-202ENST00000438821 336 ntBASIC17.43■□□□□ 0.38
TRIM38O00635 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM38O00635 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRIM38O00635 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM38O00635 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM38O00635 AC034105.1-201ENST00000563488 319 ntBASIC17.43■□□□□ 0.38
TRIM38O00635 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.43■□□□□ 0.38
TRIM38O00635 AC027601.4-201ENST00000611259 610 ntBASIC17.43■□□□□ 0.38
TRIM38O00635 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM38O00635 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM38O00635 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM38O00635 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM38O00635 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM38O00635 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRIM38O00635 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM38O00635 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM38O00635 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 KRT18P55-202ENST00000578578 1546 ntBASIC17.42■□□□□ 0.38
TRIM38O00635 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM38O00635 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TRIM38O00635 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRIM38O00635 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM38O00635 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM38O00635 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM38O00635 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.42■□□□□ 0.38
TRIM38O00635 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM38O00635 AC140113.2-201ENST00000604370 208 ntBASIC17.42■□□□□ 0.38
TRIM38O00635 AL139288.1-201ENST00000623748 933 ntBASIC17.42■□□□□ 0.38
TRIM38O00635 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM38O00635 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
TRIM38O00635 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms