Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 CRYGFP-201ENST00000418459 633 ntBASIC12.69□□□□□ -0.38
SMKR1H3BMG3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 AC104771.1-201ENST00000603335 964 ntBASIC12.69□□□□□ -0.38
SMKR1H3BMG3 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 DBET-201ENST00000630918 3363 ntBASIC12.69□□□□□ -0.38
SMKR1H3BMG3 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SMKR1H3BMG3 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 AP003041.3-201ENST00000527151 707 ntBASIC12.68□□□□□ -0.38
SMKR1H3BMG3 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 REEP1-209ENST00000541910 969 ntTSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC12.68□□□□□ -0.38
SMKR1H3BMG3 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 AP002414.2-201ENST00000591780 3365 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms