Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 RPS15P9-201ENST00000494093 319 ntBASIC17.39■□□□□ 0.37
DKK3Q9UBP4 AC034105.1-201ENST00000563488 319 ntBASIC17.39■□□□□ 0.37
DKK3Q9UBP4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 AC008667.4-201ENST00000607370 168 ntBASIC17.39■□□□□ 0.37
DKK3Q9UBP4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
DKK3Q9UBP4 AC104109.2-201ENST00000602919 1418 ntBASIC17.38■□□□□ 0.37
DKK3Q9UBP4 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 AC012313.1-201ENST00000593393 3059 ntBASIC17.38■□□□□ 0.37
DKK3Q9UBP4 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 AL138688.1-201ENST00000624851 1594 ntBASIC17.38■□□□□ 0.37
DKK3Q9UBP4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 MIR574-201ENST00000385209 96 ntBASIC17.38■□□□□ 0.37
DKK3Q9UBP4 AP002414.1-201ENST00000391405 1147 ntBASIC17.38■□□□□ 0.37
DKK3Q9UBP4 PMS2P1-201ENST00000431037 1228 ntBASIC17.38■□□□□ 0.37
DKK3Q9UBP4 AC009947.1-201ENST00000444350 727 ntBASIC17.38■□□□□ 0.37
DKK3Q9UBP4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 IGHV3-65-201ENST00000523210 341 ntBASIC17.38■□□□□ 0.37
DKK3Q9UBP4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 AL590787.1-201ENST00000568856 1315 ntBASIC17.38■□□□□ 0.37
DKK3Q9UBP4 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DKK3Q9UBP4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.37■□□□□ 0.37
DKK3Q9UBP4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 AL671883.3-201ENST00000603274 991 ntBASIC17.37■□□□□ 0.37
DKK3Q9UBP4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 MST1L-201ENST00000442552 2185 ntBASIC17.37■□□□□ 0.37
DKK3Q9UBP4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
DKK3Q9UBP4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms