Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 AL359075.1-203ENST00000462729 1002 ntBASIC17.1■□□□□ 0.33
MKS1Q9NXB0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 AL138831.2-201ENST00000606564 490 ntBASIC17.1■□□□□ 0.33
MKS1Q9NXB0 TUBB8P12-201ENST00000308911 1335 ntBASIC17.1■□□□□ 0.33
MKS1Q9NXB0 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 TUBB7P-202ENST00000428444 1305 ntBASIC17.1■□□□□ 0.33
MKS1Q9NXB0 TUBB8P7-204ENST00000567960 1332 ntBASIC17.1■□□□□ 0.33
MKS1Q9NXB0 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.1■□□□□ 0.33
MKS1Q9NXB0 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 RNF126P1-202ENST00000569893 925 ntBASIC17.09■□□□□ 0.33
MKS1Q9NXB0 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.09■□□□□ 0.33
MKS1Q9NXB0 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 AC009336.1-201ENST00000608941 1553 ntBASIC17.09■□□□□ 0.33
MKS1Q9NXB0 Z83836.1-201ENST00000624605 1642 ntBASIC17.09■□□□□ 0.33
MKS1Q9NXB0 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.09■□□□□ 0.33
MKS1Q9NXB0 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MKS1Q9NXB0 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 FAM220CP-201ENST00000395253 831 ntBASIC17.08■□□□□ 0.32
MKS1Q9NXB0 YBX1P2-201ENST00000489612 999 ntBASIC17.08■□□□□ 0.32
MKS1Q9NXB0 VENTXP5-201ENST00000523979 775 ntBASIC17.08■□□□□ 0.32
MKS1Q9NXB0 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MKS1Q9NXB0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms