Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.16■□□□□ 0.02
NKX3-1Q99801 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 AP000523.1-201ENST00000398242 1049 ntBASIC15.16■□□□□ 0.02
NKX3-1Q99801 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NKX3-1Q99801 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
NKX3-1Q99801 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 AK4P3-201ENST00000418260 669 ntBASIC15.15■□□□□ 0.02
NKX3-1Q99801 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 TSPY12P-201ENST00000421279 868 ntBASIC15.15■□□□□ 0.02
NKX3-1Q99801 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 DUX4L26-201ENST00000489078 1255 ntBASIC15.15■□□□□ 0.02
NKX3-1Q99801 AC034232.1-201ENST00000506026 1064 ntBASIC15.15■□□□□ 0.02
NKX3-1Q99801 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.15■□□□□ 0.02
NKX3-1Q99801 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NKX3-1Q99801 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms