Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 AC046185.3-201ENST00000623228 1824 ntBASIC13□□□□□ -0.33
LINC00477Q96M19 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13□□□□□ -0.33
LINC00477Q96M19 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC13□□□□□ -0.33
LINC00477Q96M19 AC007967.3-201ENST00000434308 558 ntBASIC13□□□□□ -0.33
LINC00477Q96M19 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC13□□□□□ -0.33
LINC00477Q96M19 VENTXP5-201ENST00000523979 775 ntBASIC13□□□□□ -0.33
LINC00477Q96M19 RNF126P1-202ENST00000569893 925 ntBASIC13□□□□□ -0.33
LINC00477Q96M19 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 WDR6-223ENST00000627177 207 ntTSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 AC099398.1-201ENST00000567919 2776 ntBASIC13□□□□□ -0.33
LINC00477Q96M19 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 AC124067.4-201ENST00000519691 2379 ntBASIC13□□□□□ -0.33
LINC00477Q96M19 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 AC060834.1-201ENST00000443027 2032 ntBASIC13□□□□□ -0.33
LINC00477Q96M19 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 ACE-204ENST00000428043 5120 ntTSL 2 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 AC106886.4-201ENST00000623557 2502 ntBASIC12.99□□□□□ -0.33
LINC00477Q96M19 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 UBC-206ENST00000538617 1303 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 FAM220CP-201ENST00000395253 831 ntBASIC12.99□□□□□ -0.33
LINC00477Q96M19 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 AC011840.4-201ENST00000578471 627 ntBASIC12.99□□□□□ -0.33
LINC00477Q96M19 AC090616.6-201ENST00000582640 721 ntBASIC12.99□□□□□ -0.33
LINC00477Q96M19 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 AC019129.2-201ENST00000609837 1235 ntBASIC12.99□□□□□ -0.33
LINC00477Q96M19 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 OS9-205ENST00000413095 1660 ntTSL 2 BASIC12.99□□□□□ -0.33
LINC00477Q96M19 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms