Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
SLC44A3Q8N4M1 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.65■□□□□ 0.42
SLC44A3Q8N4M1 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SLC44A3Q8N4M1 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
SLC44A3Q8N4M1 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.64■□□□□ 0.42
SLC44A3Q8N4M1 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SLC44A3Q8N4M1 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
SLC44A3Q8N4M1 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 AC046185.3-201ENST00000623228 1824 ntBASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 RARRES2P8-201ENST00000566335 367 ntBASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 FO538757.1-201ENST00000623083 1397 ntBASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.64■□□□□ 0.41
SLC44A3Q8N4M1 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 AP000997.3-201ENST00000623333 2250 ntBASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.63■□□□□ 0.41
SLC44A3Q8N4M1 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 SPCS2P4-201ENST00000436160 681 ntBASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 AC125807.1-201ENST00000483097 614 ntBASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 AC140878.1-201ENST00000565277 250 ntBASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 MIR4515-201ENST00000584082 81 ntBASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 LINC02560-201ENST00000596379 459 ntBASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms