Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 AL031133.1-201ENST00000406807 723 ntBASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 AC112497.1-201ENST00000624824 639 ntBASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 AC009949.1-201ENST00000623048 1830 ntBASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.17■□□□□ 0.18
DEPDC4Q8N2C3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 AC112907.2-201ENST00000448639 330 ntBASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 AC024243.1-201ENST00000609234 778 ntBASIC16.16■□□□□ 0.18
DEPDC4Q8N2C3 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms