Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 ACTG1P4-201ENST00000425123 1122 ntBASIC16.92■□□□□ 0.3
VRK3Q8IV63 HNRNPDP1-201ENST00000439535 754 ntBASIC16.92■□□□□ 0.3
VRK3Q8IV63 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 RNPS1P1-201ENST00000507437 918 ntBASIC16.92■□□□□ 0.3
VRK3Q8IV63 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.92■□□□□ 0.3
VRK3Q8IV63 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
VRK3Q8IV63 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.91■□□□□ 0.3
VRK3Q8IV63 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.91■□□□□ 0.3
VRK3Q8IV63 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 RPS2P1-201ENST00000434010 821 ntBASIC16.91■□□□□ 0.3
VRK3Q8IV63 FAAHP1-202ENST00000446499 1238 ntBASIC16.91■□□□□ 0.3
VRK3Q8IV63 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 AP002469.2-201ENST00000531724 424 ntBASIC16.91■□□□□ 0.3
VRK3Q8IV63 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
VRK3Q8IV63 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.91■□□□□ 0.3
VRK3Q8IV63 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.91■□□□□ 0.3
VRK3Q8IV63 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.91■□□□□ 0.3
VRK3Q8IV63 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.91■□□□□ 0.3
VRK3Q8IV63 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VRK3Q8IV63 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.91■□□□□ 0.3
VRK3Q8IV63 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 AC090340.1-201ENST00000620778 4980 ntBASIC16.9■□□□□ 0.3
VRK3Q8IV63 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 LINC02012-201ENST00000608206 1725 ntBASIC16.9■□□□□ 0.3
VRK3Q8IV63 EGFEM1P-202ENST00000431685 1563 ntBASIC16.9■□□□□ 0.3
VRK3Q8IV63 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 AC018712.1-201ENST00000455767 687 ntBASIC16.9■□□□□ 0.3
VRK3Q8IV63 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms