Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 KRT19P2-202ENST00000557173 1012 ntBASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC21.51■■□□□ 1.03
UBE3BQ7Z3V4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 CXCL1P1-201ENST00000502804 216 ntBASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
UBE3BQ7Z3V4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 AC025580.3-201ENST00000617932 1424 ntBASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 COA5-202ENST00000409997 557 ntTSL 4 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 PDPK2P-202ENST00000562415 1191 ntBASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 ACTL9-202ENST00000612068 1252 ntBASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
UBE3BQ7Z3V4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 AL078644.1-201ENST00000609881 752 ntBASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 AC134684.3-201ENST00000641758 218 ntBASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBE3BQ7Z3V4 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 CYP51A1P2-201ENST00000419457 1499 ntBASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms