Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 LINC00304-203ENST00000565008 1864 ntBASIC21.58■■□□□ 1.05
RC3H1Q5TC82 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 LYSMD4-203ENST00000378904 2122 ntBASIC21.58■■□□□ 1.05
RC3H1Q5TC82 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 SERBP1P5-201ENST00000510079 1181 ntBASIC21.58■■□□□ 1.05
RC3H1Q5TC82 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 MIR4453-201ENST00000584019 89 ntBASIC21.58■■□□□ 1.05
RC3H1Q5TC82 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.58■■□□□ 1.05
RC3H1Q5TC82 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.58■■□□□ 1.04
RC3H1Q5TC82 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
RC3H1Q5TC82 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
RC3H1Q5TC82 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.58■■□□□ 1.04
RC3H1Q5TC82 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
RC3H1Q5TC82 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
RC3H1Q5TC82 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC21.58■■□□□ 1.04
RC3H1Q5TC82 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
RC3H1Q5TC82 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 AP000974.1-201ENST00000623909 2387 ntBASIC21.57■■□□□ 1.04
RC3H1Q5TC82 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 AC027307.3-201ENST00000594262 1100 ntBASIC21.57■■□□□ 1.04
RC3H1Q5TC82 AL031055.1-201ENST00000606362 631 ntBASIC21.57■■□□□ 1.04
RC3H1Q5TC82 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.57■■□□□ 1.04
RC3H1Q5TC82 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 TSSK5P-201ENST00000423978 907 ntBASIC21.56■■□□□ 1.04
RC3H1Q5TC82 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 AC025048.6-201ENST00000634326 1161 ntBASIC21.56■■□□□ 1.04
RC3H1Q5TC82 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
RC3H1Q5TC82 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 PIN1P1-201ENST00000412108 996 ntBASIC21.55■■□□□ 1.04
RC3H1Q5TC82 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 AC091167.2-201ENST00000579581 588 ntBASIC21.55■■□□□ 1.04
RC3H1Q5TC82 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 NKG7-205ENST00000600427 520 ntTSL 3 BASIC21.55■■□□□ 1.04
RC3H1Q5TC82 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.55■■□□□ 1.04
RC3H1Q5TC82 AL662799.1-202ENST00000614205 422 ntBASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms