Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 AD001527.2-201ENST00000622994 785 ntBASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 AC132938.5-201ENST00000624980 1813 ntBASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 AC116353.5-201ENST00000638148 1699 ntBASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
PTCHD3Q3KNS1 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 AC106795.1-205ENST00000512851 1056 ntBASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 AL662844.1-201ENST00000546340 181 ntBASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PTCHD3Q3KNS1 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms