Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 AC245100.3-201ENST00000441281 285 ntBASIC16.65■□□□□ 0.26
COL28A1Q2UY09 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 INGX-202ENST00000489074 768 ntBASIC16.65■□□□□ 0.26
COL28A1Q2UY09 MEIS3P1-201ENST00000495167 958 ntBASIC16.65■□□□□ 0.26
COL28A1Q2UY09 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 AC109322.1-201ENST00000524499 1264 ntBASIC16.65■□□□□ 0.26
COL28A1Q2UY09 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 AC093520.2-201ENST00000561830 333 ntBASIC16.65■□□□□ 0.26
COL28A1Q2UY09 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL28A1Q2UY09 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AC236430.1-201ENST00000402231 743 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 FAM58CP-201ENST00000435741 640 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 HCG4B-203ENST00000450128 991 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 SIGLEC30P-201ENST00000455569 941 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AC008687.5-201ENST00000593746 558 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AL359881.2-201ENST00000602973 570 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AL390955.2-201ENST00000603032 514 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AL354751.1-201ENST00000412768 1863 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AC093677.2-201ENST00000600169 1863 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL28A1Q2UY09 AC012313.1-201ENST00000593393 3059 ntBASIC16.64■□□□□ 0.25
COL28A1Q2UY09 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 AC079776.2-201ENST00000641154 1609 ntBASIC16.63■□□□□ 0.25
COL28A1Q2UY09 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms