Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 AC246785.2-201ENST00000432512 513 ntBASIC16.72■□□□□ 0.27
HMGCS1Q01581 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 AC111152.3-201ENST00000569699 673 ntBASIC16.72■□□□□ 0.27
HMGCS1Q01581 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGCS1Q01581 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 AC103564.2-201ENST00000432853 1299 ntBASIC16.71■□□□□ 0.27
HMGCS1Q01581 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGCS1Q01581 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGCS1Q01581 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 STK25P1-201ENST00000585406 838 ntBASIC16.71■□□□□ 0.27
HMGCS1Q01581 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGCS1Q01581 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HMGCS1Q01581 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGCS1Q01581 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
HMGCS1Q01581 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGCS1Q01581 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGCS1Q01581 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
HMGCS1Q01581 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HMGCS1Q01581 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
HMGCS1Q01581 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
HMGCS1Q01581 AC105020.1-201ENST00000435356 2205 ntBASIC16.7■□□□□ 0.26
HMGCS1Q01581 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 PCED1CP-201ENST00000419887 785 ntBASIC16.7■□□□□ 0.26
HMGCS1Q01581 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 VENTXP7-201ENST00000475503 772 ntBASIC16.7■□□□□ 0.26
HMGCS1Q01581 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 AL358472.4-201ENST00000633140 710 ntBASIC16.7■□□□□ 0.26
HMGCS1Q01581 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.7■□□□□ 0.26
HMGCS1Q01581 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGCS1Q01581 KRT18P1-202ENST00000452408 1331 ntBASIC16.7■□□□□ 0.26
HMGCS1Q01581 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGCS1Q01581 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGCS1Q01581 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGCS1Q01581 UBALD1-205ENST00000590891 2641 ntBASIC16.69■□□□□ 0.26
HMGCS1Q01581 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGCS1Q01581 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms