Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.68■□□□□ 0.1
SUMO3P55854 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SUMO3P55854 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.68■□□□□ 0.1
SUMO3P55854 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SUMO3P55854 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SUMO3P55854 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SUMO3P55854 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SUMO3P55854 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SUMO3P55854 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SUMO3P55854 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.67■□□□□ 0.1
SUMO3P55854 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.67■□□□□ 0.1
SUMO3P55854 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.67■□□□□ 0.1
SUMO3P55854 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.67■□□□□ 0.1
SUMO3P55854 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.67■□□□□ 0.1
SUMO3P55854 KRT18P67-201ENST00000432816 1264 ntBASIC15.67■□□□□ 0.1
SUMO3P55854 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.67■□□□□ 0.1
SUMO3P55854 AC018712.1-201ENST00000455767 687 ntBASIC15.67■□□□□ 0.1
SUMO3P55854 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.67■□□□□ 0.1
SUMO3P55854 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.67■□□□□ 0.1
SUMO3P55854 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.67■□□□□ 0.1
SUMO3P55854 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.67■□□□□ 0.1
SUMO3P55854 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.67■□□□□ 0.1
SUMO3P55854 TP73-AS1-207ENST00000624167 988 ntBASIC15.67■□□□□ 0.1
SUMO3P55854 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SUMO3P55854 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SUMO3P55854 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.67■□□□□ 0.1
SUMO3P55854 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SUMO3P55854 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SUMO3P55854 AC108860.2-201ENST00000562760 2183 ntBASIC15.67■□□□□ 0.1
SUMO3P55854 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SUMO3P55854 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SUMO3P55854 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SUMO3P55854 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SUMO3P55854 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.66■□□□□ 0.1
SUMO3P55854 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
SUMO3P55854 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.66■□□□□ 0.1
SUMO3P55854 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.66■□□□□ 0.1
SUMO3P55854 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.66■□□□□ 0.1
SUMO3P55854 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.66■□□□□ 0.1
SUMO3P55854 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 RPS2P28-201ENST00000314255 741 ntBASIC15.66■□□□□ 0.1
SUMO3P55854 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.66■□□□□ 0.1
SUMO3P55854 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.66■□□□□ 0.1
SUMO3P55854 FAM197Y8-203ENST00000450145 560 ntBASIC15.66■□□□□ 0.1
SUMO3P55854 RNPS1P1-201ENST00000507437 918 ntBASIC15.66■□□□□ 0.1
SUMO3P55854 OR7E14P-202ENST00000530490 1290 ntBASIC15.66■□□□□ 0.1
SUMO3P55854 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.66■□□□□ 0.1
SUMO3P55854 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.66■□□□□ 0.1
SUMO3P55854 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.66■□□□□ 0.1
SUMO3P55854 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.66■□□□□ 0.1
SUMO3P55854 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.66■□□□□ 0.1
SUMO3P55854 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.66■□□□□ 0.1
SUMO3P55854 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SUMO3P55854 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SUMO3P55854 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SUMO3P55854 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SUMO3P55854 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SUMO3P55854 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SUMO3P55854 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.65■□□□□ 0.1
SUMO3P55854 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
SUMO3P55854 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.65■□□□□ 0.1
SUMO3P55854 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SUMO3P55854 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.65■□□□□ 0.1
SUMO3P55854 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SUMO3P55854 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.65■□□□□ 0.1
SUMO3P55854 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
SUMO3P55854 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.65■□□□□ 0.1
SUMO3P55854 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SUMO3P55854 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SUMO3P55854 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.65■□□□□ 0.1
SUMO3P55854 AC079781.3-201ENST00000449110 356 ntBASIC15.65■□□□□ 0.1
SUMO3P55854 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SUMO3P55854 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.65■□□□□ 0.1
SUMO3P55854 AL160237.2-201ENST00000556165 472 ntBASIC15.65■□□□□ 0.1
SUMO3P55854 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.65■□□□□ 0.1
SUMO3P55854 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms