Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX3P41225 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.35■□□□□ 0.21
SOX3P41225 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.35■□□□□ 0.21
SOX3P41225 AL121912.1-201ENST00000603683 238 ntBASIC16.35■□□□□ 0.21
SOX3P41225 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
SOX3P41225 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX3P41225 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.35■□□□□ 0.21
SOX3P41225 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
SOX3P41225 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SOX3P41225 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.35■□□□□ 0.21
SOX3P41225 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
SOX3P41225 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SOX3P41225 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
SOX3P41225 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.34■□□□□ 0.21
SOX3P41225 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
SOX3P41225 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SOX3P41225 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.34■□□□□ 0.21
SOX3P41225 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.34■□□□□ 0.21
SOX3P41225 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.34■□□□□ 0.21
SOX3P41225 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SOX3P41225 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
SOX3P41225 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.34■□□□□ 0.21
SOX3P41225 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
SOX3P41225 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.34■□□□□ 0.21
SOX3P41225 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.34■□□□□ 0.21
SOX3P41225 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SOX3P41225 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
SOX3P41225 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.34■□□□□ 0.21
SOX3P41225 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SOX3P41225 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX3P41225 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.21
SOX3P41225 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.21
SOX3P41225 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SOX3P41225 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SOX3P41225 AC008894.3-201ENST00000624324 3103 ntBASIC16.33■□□□□ 0.21
SOX3P41225 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
SOX3P41225 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX3P41225 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX3P41225 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.33■□□□□ 0.2
SOX3P41225 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX3P41225 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX3P41225 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.33■□□□□ 0.2
SOX3P41225 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.33■□□□□ 0.2
SOX3P41225 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SOX3P41225 AC104692.2-201ENST00000603054 253 ntBASIC16.33■□□□□ 0.2
SOX3P41225 AC008608.2-201ENST00000606089 416 ntBASIC16.33■□□□□ 0.2
SOX3P41225 AP001269.4-201ENST00000609611 512 ntBASIC16.33■□□□□ 0.2
SOX3P41225 AC116407.2-201ENST00000613639 860 ntBASIC16.33■□□□□ 0.2
SOX3P41225 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX3P41225 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SOX3P41225 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX3P41225 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 AC009949.1-201ENST00000623048 1830 ntBASIC16.33■□□□□ 0.2
SOX3P41225 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SOX3P41225 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX3P41225 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.33■□□□□ 0.2
SOX3P41225 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.32■□□□□ 0.2
SOX3P41225 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms