Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
MSX1P28360 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 RPS2P28-201ENST00000314255 741 ntBASIC15.89■□□□□ 0.13
MSX1P28360 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.89■□□□□ 0.13
MSX1P28360 RPL13AP23-201ENST00000480739 586 ntBASIC15.89■□□□□ 0.13
MSX1P28360 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.89■□□□□ 0.13
MSX1P28360 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.89■□□□□ 0.13
MSX1P28360 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.89■□□□□ 0.13
MSX1P28360 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.89■□□□□ 0.13
MSX1P28360 TERC-201ENST00000602385 541 ntBASIC15.89■□□□□ 0.13
MSX1P28360 AL049840.3-201ENST00000602669 611 ntBASIC15.89■□□□□ 0.13
MSX1P28360 AC244517.3-201ENST00000616254 1235 ntBASIC15.89■□□□□ 0.13
MSX1P28360 FAM215A-202ENST00000632077 792 ntBASIC15.89■□□□□ 0.13
MSX1P28360 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
MSX1P28360 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
MSX1P28360 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
MSX1P28360 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
MSX1P28360 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.89■□□□□ 0.13
MSX1P28360 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.89■□□□□ 0.13
MSX1P28360 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
MSX1P28360 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
MSX1P28360 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.89■□□□□ 0.13
MSX1P28360 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX1P28360 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
MSX1P28360 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 AL356309.3-201ENST00000624132 1934 ntBASIC15.88■□□□□ 0.13
MSX1P28360 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
MSX1P28360 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX1P28360 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 BX842568.4-201ENST00000421222 227 ntBASIC15.88■□□□□ 0.13
MSX1P28360 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.88■□□□□ 0.13
MSX1P28360 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX1P28360 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.88■□□□□ 0.13
MSX1P28360 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX1P28360 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX1P28360 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX1P28360 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX1P28360 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX1P28360 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX1P28360 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
MSX1P28360 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX1P28360 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX1P28360 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
MSX1P28360 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
MSX1P28360 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC15.87■□□□□ 0.13
MSX1P28360 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.87■□□□□ 0.13
MSX1P28360 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.87■□□□□ 0.13
MSX1P28360 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX1P28360 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX1P28360 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX1P28360 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.87■□□□□ 0.13
MSX1P28360 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.87■□□□□ 0.13
MSX1P28360 AC120057.1-201ENST00000483947 663 ntBASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms