Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
COL8A1P27658 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
COL8A1P27658 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 AC002056.1-201ENST00000395613 760 ntBASIC15.1■□□□□ 0.01
COL8A1P27658 GPS2P2-201ENST00000430745 888 ntBASIC15.1■□□□□ 0.01
COL8A1P27658 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 KRT17P7-201ENST00000451704 1104 ntBASIC15.1■□□□□ 0.01
COL8A1P27658 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.1■□□□□ 0.01
COL8A1P27658 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 SPDYE22P-201ENST00000582158 798 ntBASIC15.1■□□□□ 0.01
COL8A1P27658 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.1■□□□□ 0.01
COL8A1P27658 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 AC099522.2-201ENST00000607001 744 ntBASIC15.1■□□□□ 0.01
COL8A1P27658 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.1■□□□□ 0.01
COL8A1P27658 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.1■□□□□ 0.01
COL8A1P27658 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
COL8A1P27658 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
COL8A1P27658 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC15.1■□□□□ 0.01
COL8A1P27658 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL8A1P27658 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
COL8A1P27658 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC15.09■□□□□ 0.01
COL8A1P27658 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL8A1P27658 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC15.09■□□□□ 0.01
COL8A1P27658 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
COL8A1P27658 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC15.09■□□□□ 0.01
COL8A1P27658 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
COL8A1P27658 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.09■□□□□ 0.01
COL8A1P27658 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.09■□□□□ 0.01
COL8A1P27658 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.09■□□□□ 0.01
COL8A1P27658 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.09■□□□□ 0.01
COL8A1P27658 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.09■□□□□ 0.01
COL8A1P27658 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.09■□□□□ 0.01
COL8A1P27658 AC097493.3-201ENST00000509725 367 ntBASIC15.09■□□□□ 0.01
COL8A1P27658 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.09■□□□□ 0.01
COL8A1P27658 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.09■□□□□ 0.01
COL8A1P27658 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC15.09■□□□□ 0.01
COL8A1P27658 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 AL049812.1-201ENST00000432563 2267 ntBASIC15.09■□□□□ 0.01
COL8A1P27658 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL8A1P27658 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL8A1P27658 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.08■□□□□ 0.01
COL8A1P27658 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL8A1P27658 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL8A1P27658 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.08■□□□□ 0.01
COL8A1P27658 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
COL8A1P27658 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL8A1P27658 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
COL8A1P27658 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC15.08■□□□□ 0
COL8A1P27658 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms