Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.7■□□□□ 0.42
COL9A1P20849 AC140912.1-201ENST00000577171 1054 ntBASIC17.7■□□□□ 0.42
COL9A1P20849 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.7■□□□□ 0.42
COL9A1P20849 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
COL9A1P20849 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.7■□□□□ 0.42
COL9A1P20849 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.7■□□□□ 0.42
COL9A1P20849 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.7■□□□□ 0.42
COL9A1P20849 NCF1C-201ENST00000438382 1427 ntBASIC17.7■□□□□ 0.42
COL9A1P20849 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
COL9A1P20849 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.69■□□□□ 0.42
COL9A1P20849 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.69■□□□□ 0.42
COL9A1P20849 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.69■□□□□ 0.42
COL9A1P20849 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.69■□□□□ 0.42
COL9A1P20849 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.69■□□□□ 0.42
COL9A1P20849 AL355306.1-201ENST00000415580 579 ntBASIC17.69■□□□□ 0.42
COL9A1P20849 GOLGA2P4-201ENST00000441462 777 ntBASIC17.69■□□□□ 0.42
COL9A1P20849 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.69■□□□□ 0.42
COL9A1P20849 KRT223P-202ENST00000449164 1292 ntBASIC17.69■□□□□ 0.42
COL9A1P20849 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.69■□□□□ 0.42
COL9A1P20849 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.69■□□□□ 0.42
COL9A1P20849 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.69■□□□□ 0.42
COL9A1P20849 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.69■□□□□ 0.42
COL9A1P20849 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.69■□□□□ 0.42
COL9A1P20849 OR7E47P-204ENST00000575924 449 ntBASIC17.69■□□□□ 0.42
COL9A1P20849 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.69■□□□□ 0.42
COL9A1P20849 COX11-210ENST00000639671 696 ntBASIC17.69■□□□□ 0.42
COL9A1P20849 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.69■□□□□ 0.42
COL9A1P20849 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.69■□□□□ 0.42
COL9A1P20849 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.69■□□□□ 0.42
COL9A1P20849 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.69■□□□□ 0.42
COL9A1P20849 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.69■□□□□ 0.42
COL9A1P20849 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL9A1P20849 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
COL9A1P20849 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.68■□□□□ 0.42
COL9A1P20849 AC018445.3-201ENST00000624177 1945 ntBASIC17.68■□□□□ 0.42
COL9A1P20849 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL9A1P20849 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.68■□□□□ 0.42
COL9A1P20849 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 AP006294.1-201ENST00000415407 339 ntBASIC17.68■□□□□ 0.42
COL9A1P20849 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.68■□□□□ 0.42
COL9A1P20849 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.68■□□□□ 0.42
COL9A1P20849 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.68■□□□□ 0.42
COL9A1P20849 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.68■□□□□ 0.42
COL9A1P20849 KRT8P23-201ENST00000560090 1207 ntBASIC17.68■□□□□ 0.42
COL9A1P20849 AP005482.1-201ENST00000563722 1273 ntBASIC17.68■□□□□ 0.42
COL9A1P20849 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.68■□□□□ 0.42
COL9A1P20849 AC026740.1-201ENST00000607068 791 ntBASIC17.68■□□□□ 0.42
COL9A1P20849 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL9A1P20849 AC133552.6-201ENST00000613406 534 ntBASIC17.68■□□□□ 0.42
COL9A1P20849 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL9A1P20849 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
COL9A1P20849 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
COL9A1P20849 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL9A1P20849 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL9A1P20849 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
COL9A1P20849 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.67■□□□□ 0.42
COL9A1P20849 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.67■□□□□ 0.42
COL9A1P20849 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.67■□□□□ 0.42
COL9A1P20849 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.67■□□□□ 0.42
COL9A1P20849 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms