Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 FAM185BP-201ENST00000443595 716 ntBASIC20.35■□□□□ 0.85
HLA-DOAP06340 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.35■□□□□ 0.85
HLA-DOAP06340 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.35■□□□□ 0.85
HLA-DOAP06340 AL596442.2-201ENST00000610240 980 ntBASIC20.35■□□□□ 0.85
HLA-DOAP06340 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.35■□□□□ 0.85
HLA-DOAP06340 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
HLA-DOAP06340 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
HLA-DOAP06340 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.35■□□□□ 0.85
HLA-DOAP06340 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 ELL2P1-201ENST00000413990 1906 ntBASIC20.35■□□□□ 0.85
HLA-DOAP06340 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DOAP06340 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.35■□□□□ 0.85
HLA-DOAP06340 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DOAP06340 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DOAP06340 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DOAP06340 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 CEND1P1-201ENST00000451006 455 ntBASIC20.34■□□□□ 0.85
HLA-DOAP06340 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 SLC25A6P2-201ENST00000497974 877 ntBASIC20.34■□□□□ 0.85
HLA-DOAP06340 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 SNHG9-202ENST00000564014 471 ntBASIC20.34■□□□□ 0.85
HLA-DOAP06340 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DOAP06340 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DOAP06340 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DOAP06340 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DOAP06340 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DOAP06340 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.34■□□□□ 0.85
HLA-DOAP06340 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DOAP06340 AL390961.4-201ENST00000623958 2535 ntBASIC20.33■□□□□ 0.85
HLA-DOAP06340 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DOAP06340 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 REM2-202ENST00000536884 1331 ntTSL 2 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 AC129492.6-201ENST00000611383 1305 ntBASIC20.33■□□□□ 0.85
HLA-DOAP06340 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DOAP06340 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DOAP06340 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DOAP06340 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DOAP06340 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DOAP06340 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 AL513480.1-201ENST00000451731 511 ntBASIC20.33■□□□□ 0.85
HLA-DOAP06340 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DOAP06340 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
HLA-DOAP06340 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HLA-DOAP06340 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HLA-DOAP06340 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.33■□□□□ 0.84
HLA-DOAP06340 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
HLA-DOAP06340 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.33■□□□□ 0.84
HLA-DOAP06340 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HLA-DOAP06340 OR6D1P-202ENST00000641007 5290 ntBASIC20.33■□□□□ 0.84
HLA-DOAP06340 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.32■□□□□ 0.84
HLA-DOAP06340 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.32■□□□□ 0.84
HLA-DOAP06340 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.32■□□□□ 0.84
HLA-DOAP06340 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.32■□□□□ 0.84
HLA-DOAP06340 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.32■□□□□ 0.84
HLA-DOAP06340 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DOAP06340 NEK7-201ENST00000367383 586 ntTSL 2 BASIC20.32■□□□□ 0.84
HLA-DOAP06340 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms