Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHRNA1P02708 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHRNA1P02708 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CHRNA1P02708 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHRNA1P02708 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.73■□□□□ 0.59
CHRNA1P02708 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.72■□□□□ 0.59
CHRNA1P02708 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.72■□□□□ 0.59
CHRNA1P02708 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.72■□□□□ 0.59
CHRNA1P02708 LINC00628-201ENST00000628516 1289 ntBASIC18.72■□□□□ 0.59
CHRNA1P02708 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.72■□□□□ 0.59
CHRNA1P02708 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
CHRNA1P02708 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHRNA1P02708 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.71■□□□□ 0.59
CHRNA1P02708 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.71■□□□□ 0.59
CHRNA1P02708 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.71■□□□□ 0.59
CHRNA1P02708 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CHRNA1P02708 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 AL627223.1-201ENST00000416693 442 ntBASIC18.71■□□□□ 0.59
CHRNA1P02708 FAM8A3P-201ENST00000427218 844 ntBASIC18.71■□□□□ 0.59
CHRNA1P02708 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.71■□□□□ 0.59
CHRNA1P02708 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.71■□□□□ 0.59
CHRNA1P02708 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.71■□□□□ 0.59
CHRNA1P02708 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CHRNA1P02708 MIR4515-201ENST00000584082 81 ntBASIC18.71■□□□□ 0.59
CHRNA1P02708 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.71■□□□□ 0.59
CHRNA1P02708 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.71■□□□□ 0.59
CHRNA1P02708 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.71■□□□□ 0.59
CHRNA1P02708 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CHRNA1P02708 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHRNA1P02708 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.71■□□□□ 0.59
CHRNA1P02708 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.71■□□□□ 0.59
CHRNA1P02708 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.71■□□□□ 0.59
CHRNA1P02708 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CHRNA1P02708 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CHRNA1P02708 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
CHRNA1P02708 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
CHRNA1P02708 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA1P02708 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA1P02708 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.7■□□□□ 0.58
CHRNA1P02708 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CHRNA1P02708 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CHRNA1P02708 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
CHRNA1P02708 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.7■□□□□ 0.58
CHRNA1P02708 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 AC025678.2-201ENST00000562061 970 ntBASIC18.7■□□□□ 0.58
CHRNA1P02708 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.7■□□□□ 0.58
CHRNA1P02708 AC092364.2-202ENST00000597012 1073 ntBASIC18.7■□□□□ 0.58
CHRNA1P02708 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA1P02708 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA1P02708 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA1P02708 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA1P02708 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 AC135050.7-201ENST00000624508 2218 ntBASIC18.7■□□□□ 0.58
CHRNA1P02708 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA1P02708 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA1P02708 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.69■□□□□ 0.58
CHRNA1P02708 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CHRNA1P02708 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CHRNA1P02708 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CHRNA1P02708 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CHRNA1P02708 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms