Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AC022145.2-201ENST00000598203 171 ntBASIC20.68■□□□□ 0.9
COL1A1P02452 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.68■□□□□ 0.9
COL1A1P02452 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL1A1P02452 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
COL1A1P02452 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
COL1A1P02452 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL1A1P02452 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 AC129492.6-201ENST00000611383 1305 ntBASIC20.67■□□□□ 0.9
COL1A1P02452 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL1A1P02452 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.67■□□□□ 0.9
COL1A1P02452 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 AC004461.1-201ENST00000412461 403 ntBASIC20.67■□□□□ 0.9
COL1A1P02452 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.67■□□□□ 0.9
COL1A1P02452 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.67■□□□□ 0.9
COL1A1P02452 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC20.67■□□□□ 0.9
COL1A1P02452 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC20.67■□□□□ 0.9
COL1A1P02452 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 AC105339.1-204ENST00000636249 355 ntBASIC20.67■□□□□ 0.9
COL1A1P02452 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC20.67■□□□□ 0.9
COL1A1P02452 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL1A1P02452 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.67■□□□□ 0.9
COL1A1P02452 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
COL1A1P02452 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.66■□□□□ 0.9
COL1A1P02452 REM2-202ENST00000536884 1331 ntTSL 2 BASIC20.66■□□□□ 0.9
COL1A1P02452 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.66■□□□□ 0.9
COL1A1P02452 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.66■□□□□ 0.9
COL1A1P02452 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL1A1P02452 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
COL1A1P02452 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL1A1P02452 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
COL1A1P02452 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC20.66■□□□□ 0.9
COL1A1P02452 HLA-J-203ENST00000494367 1087 ntBASIC20.66■□□□□ 0.9
COL1A1P02452 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
COL1A1P02452 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
COL1A1P02452 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
COL1A1P02452 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL1A1P02452 GNAS-203ENST00000306120 1878 ntBASIC20.66■□□□□ 0.9
COL1A1P02452 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COL1A1P02452 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL1A1P02452 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.65■□□□□ 0.9
COL1A1P02452 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.65■□□□□ 0.9
COL1A1P02452 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL1A1P02452 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.65■□□□□ 0.9
COL1A1P02452 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
COL1A1P02452 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL1A1P02452 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC20.65■□□□□ 0.9
COL1A1P02452 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.65■□□□□ 0.9
COL1A1P02452 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20.65■□□□□ 0.9
COL1A1P02452 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL1A1P02452 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.65■□□□□ 0.9
COL1A1P02452 AC093512.1-201ENST00000617969 520 ntBASIC20.65■□□□□ 0.9
COL1A1P02452 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL1A1P02452 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
COL1A1P02452 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL1A1P02452 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL1A1P02452 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
COL1A1P02452 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL1A1P02452 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC20.64■□□□□ 0.89
COL1A1P02452 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL1A1P02452 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.64■□□□□ 0.89
COL1A1P02452 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC20.64■□□□□ 0.89
COL1A1P02452 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL1A1P02452 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL1A1P02452 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
COL1A1P02452 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL1A1P02452 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
COL1A1P02452 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL1A1P02452 PP12613-201ENST00000424958 2230 ntBASIC20.64■□□□□ 0.89
COL1A1P02452 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL1A1P02452 SLC22A20-204ENST00000530038 1673 ntBASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms