Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC3O75056 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC3O75056 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 AL135999.2-201ENST00000622438 1686 ntBASIC16.91■□□□□ 0.3
SDC3O75056 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SDC3O75056 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.9■□□□□ 0.3
SDC3O75056 AC020916.1-201ENST00000587762 1774 ntBASIC16.9■□□□□ 0.3
SDC3O75056 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SDC3O75056 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SDC3O75056 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SDC3O75056 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.9■□□□□ 0.3
SDC3O75056 ACTG1P4-201ENST00000425123 1122 ntBASIC16.9■□□□□ 0.3
SDC3O75056 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.9■□□□□ 0.3
SDC3O75056 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.9■□□□□ 0.3
SDC3O75056 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.9■□□□□ 0.3
SDC3O75056 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SDC3O75056 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
SDC3O75056 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
SDC3O75056 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SDC3O75056 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.9■□□□□ 0.3
SDC3O75056 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.9■□□□□ 0.3
SDC3O75056 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 REXO1L11P-201ENST00000620964 1927 ntBASIC16.9■□□□□ 0.3
SDC3O75056 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC3O75056 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.9■□□□□ 0.3
SDC3O75056 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.9■□□□□ 0.3
SDC3O75056 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SDC3O75056 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SDC3O75056 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
SDC3O75056 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.89■□□□□ 0.29
SDC3O75056 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.89■□□□□ 0.29
SDC3O75056 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.89■□□□□ 0.29
SDC3O75056 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.89■□□□□ 0.29
SDC3O75056 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.89■□□□□ 0.29
SDC3O75056 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.89■□□□□ 0.29
SDC3O75056 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
SDC3O75056 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.89■□□□□ 0.29
SDC3O75056 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
SDC3O75056 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.89■□□□□ 0.29
SDC3O75056 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
SDC3O75056 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC3O75056 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SDC3O75056 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SDC3O75056 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.88■□□□□ 0.29
SDC3O75056 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms