Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.37■□□□□ 0.37
SHOX2O60902 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
SHOX2O60902 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SHOX2O60902 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.36■□□□□ 0.37
SHOX2O60902 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
SHOX2O60902 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SHOX2O60902 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.36■□□□□ 0.37
SHOX2O60902 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SHOX2O60902 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC17.36■□□□□ 0.37
SHOX2O60902 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.36■□□□□ 0.37
SHOX2O60902 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SHOX2O60902 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SHOX2O60902 AL355355.2-201ENST00000442321 338 ntBASIC17.36■□□□□ 0.37
SHOX2O60902 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
SHOX2O60902 AC104390.1-201ENST00000555663 520 ntBASIC17.36■□□□□ 0.37
SHOX2O60902 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.36■□□□□ 0.37
SHOX2O60902 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SHOX2O60902 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.36■□□□□ 0.37
SHOX2O60902 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
SHOX2O60902 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SHOX2O60902 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SHOX2O60902 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHOX2O60902 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SHOX2O60902 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.36■□□□□ 0.37
SHOX2O60902 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.36■□□□□ 0.37
SHOX2O60902 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.35■□□□□ 0.37
SHOX2O60902 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.35■□□□□ 0.37
SHOX2O60902 AC239809.2-201ENST00000415381 517 ntBASIC17.35■□□□□ 0.37
SHOX2O60902 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 AC026271.3-201ENST00000571884 352 ntBASIC17.35■□□□□ 0.37
SHOX2O60902 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.35■□□□□ 0.37
SHOX2O60902 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.35■□□□□ 0.37
SHOX2O60902 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.35■□□□□ 0.37
SHOX2O60902 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.35■□□□□ 0.37
SHOX2O60902 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.35■□□□□ 0.37
SHOX2O60902 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SHOX2O60902 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SHOX2O60902 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.35■□□□□ 0.37
SHOX2O60902 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.35■□□□□ 0.37
SHOX2O60902 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHOX2O60902 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SHOX2O60902 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SHOX2O60902 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SHOX2O60902 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.34■□□□□ 0.37
SHOX2O60902 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SHOX2O60902 AC026366.1-201ENST00000488803 879 ntBASIC17.34■□□□□ 0.37
SHOX2O60902 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SHOX2O60902 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SHOX2O60902 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.34■□□□□ 0.37
SHOX2O60902 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.34■□□□□ 0.37
SHOX2O60902 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.34■□□□□ 0.37
SHOX2O60902 AL009178.2-201ENST00000597278 2719 ntBASIC17.34■□□□□ 0.37
SHOX2O60902 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SHOX2O60902 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms