Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLDN3O15551 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLDN3O15551 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CLDN3O15551 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.94■□□□□ 0.62
CLDN3O15551 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CLDN3O15551 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLDN3O15551 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.94■□□□□ 0.62
CLDN3O15551 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CLDN3O15551 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.94■□□□□ 0.62
CLDN3O15551 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.94■□□□□ 0.62
CLDN3O15551 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.94■□□□□ 0.62
CLDN3O15551 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.94■□□□□ 0.62
CLDN3O15551 AC105339.3-201ENST00000560043 636 ntBASIC18.94■□□□□ 0.62
CLDN3O15551 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.94■□□□□ 0.62
CLDN3O15551 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.94■□□□□ 0.62
CLDN3O15551 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.94■□□□□ 0.62
CLDN3O15551 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.94■□□□□ 0.62
CLDN3O15551 AC004706.3-202ENST00000621574 984 ntBASIC18.94■□□□□ 0.62
CLDN3O15551 AC116407.3-201ENST00000623905 1129 ntBASIC18.94■□□□□ 0.62
CLDN3O15551 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLDN3O15551 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CLDN3O15551 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CLDN3O15551 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLDN3O15551 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.94■□□□□ 0.62
CLDN3O15551 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLDN3O15551 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLDN3O15551 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CLDN3O15551 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.93■□□□□ 0.62
CLDN3O15551 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 LINC00982-205ENST00000420957 435 ntBASIC18.93■□□□□ 0.62
CLDN3O15551 ACTG1P4-201ENST00000425123 1122 ntBASIC18.93■□□□□ 0.62
CLDN3O15551 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.93■□□□□ 0.62
CLDN3O15551 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.93■□□□□ 0.62
CLDN3O15551 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
CLDN3O15551 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.93■□□□□ 0.62
CLDN3O15551 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.93■□□□□ 0.62
CLDN3O15551 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
CLDN3O15551 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLDN3O15551 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.93■□□□□ 0.62
CLDN3O15551 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CLDN3O15551 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.92■□□□□ 0.62
CLDN3O15551 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.92■□□□□ 0.62
CLDN3O15551 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.92■□□□□ 0.62
CLDN3O15551 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CLDN3O15551 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.92■□□□□ 0.62
CLDN3O15551 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.92■□□□□ 0.62
CLDN3O15551 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.92■□□□□ 0.62
CLDN3O15551 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 AC243591.1-201ENST00000452967 1364 ntBASIC18.92■□□□□ 0.62
CLDN3O15551 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.92■□□□□ 0.62
CLDN3O15551 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.92■□□□□ 0.62
CLDN3O15551 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLDN3O15551 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.91■□□□□ 0.62
CLDN3O15551 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.91■□□□□ 0.62
CLDN3O15551 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CLDN3O15551 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CLDN3O15551 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.91■□□□□ 0.62
CLDN3O15551 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 AL590627.1-203ENST00000421194 1026 ntBASIC18.91■□□□□ 0.62
CLDN3O15551 KRT18P27-201ENST00000427733 1299 ntBASIC18.91■□□□□ 0.62
CLDN3O15551 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.91■□□□□ 0.62
CLDN3O15551 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 AC092910.1-201ENST00000482027 1129 ntBASIC18.91■□□□□ 0.62
CLDN3O15551 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.91■□□□□ 0.62
CLDN3O15551 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.91■□□□□ 0.62
CLDN3O15551 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.91■□□□□ 0.62
CLDN3O15551 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.91■□□□□ 0.62
CLDN3O15551 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 AL139424.1-201ENST00000607572 797 ntBASIC18.91■□□□□ 0.62
CLDN3O15551 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.91■□□□□ 0.62
CLDN3O15551 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.91■□□□□ 0.62
CLDN3O15551 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms