Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
MSH4O15457 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.41■□□□□ 0.7
MSH4O15457 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.41■□□□□ 0.7
MSH4O15457 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
MSH4O15457 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.41■□□□□ 0.7
MSH4O15457 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.41■□□□□ 0.7
MSH4O15457 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH4O15457 EGFEM1P-202ENST00000431685 1563 ntBASIC19.4■□□□□ 0.7
MSH4O15457 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
MSH4O15457 FZD10-202ENST00000539839 3282 ntBASIC19.4■□□□□ 0.7
MSH4O15457 PI4KAP1-204ENST00000612579 1703 ntBASIC19.4■□□□□ 0.7
MSH4O15457 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH4O15457 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
MSH4O15457 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH4O15457 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.4■□□□□ 0.7
MSH4O15457 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH4O15457 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH4O15457 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
MSH4O15457 AC004790.2-201ENST00000623588 572 ntBASIC19.4■□□□□ 0.7
MSH4O15457 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
MSH4O15457 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
MSH4O15457 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
MSH4O15457 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 ZNF259P1-201ENST00000407656 1365 ntBASIC19.4■□□□□ 0.7
MSH4O15457 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH4O15457 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH4O15457 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH4O15457 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.4■□□□□ 0.7
MSH4O15457 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.39■□□□□ 0.7
MSH4O15457 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MSH4O15457 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MSH4O15457 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
MSH4O15457 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.39■□□□□ 0.69
MSH4O15457 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.39■□□□□ 0.69
MSH4O15457 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.39■□□□□ 0.69
MSH4O15457 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 PAWRP1-201ENST00000451083 565 ntBASIC19.39■□□□□ 0.69
MSH4O15457 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.39■□□□□ 0.69
MSH4O15457 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.39■□□□□ 0.69
MSH4O15457 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
MSH4O15457 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
MSH4O15457 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.39■□□□□ 0.69
MSH4O15457 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH4O15457 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.38■□□□□ 0.69
MSH4O15457 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.38■□□□□ 0.69
MSH4O15457 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.38■□□□□ 0.69
MSH4O15457 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.38■□□□□ 0.69
MSH4O15457 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH4O15457 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
MSH4O15457 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH4O15457 AL645608.8-201ENST00000606034 2086 ntBASIC19.37■□□□□ 0.69
MSH4O15457 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH4O15457 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
MSH4O15457 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms