Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14□□□□□ -0.17
HMGB3O15347 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 CIC-204ENST00000572681 8218 ntTSL 5 BASIC13.99□□□□□ -0.17
HMGB3O15347 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.99□□□□□ -0.17
HMGB3O15347 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC13.99□□□□□ -0.17
HMGB3O15347 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.99□□□□□ -0.17
HMGB3O15347 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HMGB3O15347 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
HMGB3O15347 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
HMGB3O15347 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
HMGB3O15347 AC005915.1-201ENST00000624912 2018 ntBASIC13.99□□□□□ -0.17
HMGB3O15347 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC13.99□□□□□ -0.17
HMGB3O15347 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC13.99□□□□□ -0.17
HMGB3O15347 AP002982.1-201ENST00000492365 877 ntBASIC13.99□□□□□ -0.17
HMGB3O15347 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
HMGB3O15347 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC13.99□□□□□ -0.17
HMGB3O15347 AC008403.3-201ENST00000598924 454 ntBASIC13.99□□□□□ -0.17
HMGB3O15347 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC13.99□□□□□ -0.17
HMGB3O15347 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC13.99□□□□□ -0.17
HMGB3O15347 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.99□□□□□ -0.17
HMGB3O15347 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HMGB3O15347 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.99□□□□□ -0.17
HMGB3O15347 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
HMGB3O15347 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HMGB3O15347 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC13.98□□□□□ -0.17
HMGB3O15347 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.98□□□□□ -0.17
HMGB3O15347 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC13.98□□□□□ -0.17
HMGB3O15347 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 AC036111.1-201ENST00000533973 1582 ntBASIC13.98□□□□□ -0.17
HMGB3O15347 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
HMGB3O15347 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC13.98□□□□□ -0.17
HMGB3O15347 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC13.98□□□□□ -0.17
HMGB3O15347 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 NCF1B-203ENST00000435988 1254 ntBASIC13.98□□□□□ -0.17
HMGB3O15347 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC13.98□□□□□ -0.17
HMGB3O15347 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC13.98□□□□□ -0.17
HMGB3O15347 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 AL137784.2-201ENST00000607332 1000 ntBASIC13.98□□□□□ -0.17
HMGB3O15347 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms