Protein–RNA interactions for Protein: A7MD48

SRRM4, Serine/arginine repetitive matrix protein 4, humanhuman

Known RBP Predictions only

Length 611 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4A7MD48 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 IGHV3-47-201ENST00000425060 335 ntBASIC13.97□□□□□ -0.17
SRRM4A7MD48 KRT17P6-201ENST00000453795 1220 ntBASIC13.97□□□□□ -0.17
SRRM4A7MD48 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 MIR3180-1-201ENST00000580374 94 ntBASIC13.97□□□□□ -0.17
SRRM4A7MD48 MIR3180-3-201ENST00000584616 94 ntBASIC13.97□□□□□ -0.17
SRRM4A7MD48 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 Z69720.1-201ENST00000601483 472 ntBASIC13.97□□□□□ -0.17
SRRM4A7MD48 AL358472.4-201ENST00000633140 710 ntBASIC13.97□□□□□ -0.17
SRRM4A7MD48 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SRRM4A7MD48 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
SRRM4A7MD48 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 NSUN5P1-202ENST00000421140 1535 ntBASIC13.96□□□□□ -0.17
SRRM4A7MD48 NSUN5P2-203ENST00000457352 1529 ntBASIC13.96□□□□□ -0.17
SRRM4A7MD48 INTS4P1-201ENST00000438455 1935 ntBASIC13.96□□□□□ -0.17
SRRM4A7MD48 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 AGGF1P2-201ENST00000426656 2106 ntBASIC13.96□□□□□ -0.17
SRRM4A7MD48 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 AL135999.2-201ENST00000622438 1686 ntBASIC13.96□□□□□ -0.17
SRRM4A7MD48 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 RCN1P2-201ENST00000398357 915 ntBASIC13.96□□□□□ -0.17
SRRM4A7MD48 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 COPS8-203ENST00000409334 794 ntTSL 5 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 LINC00265-3P-201ENST00000447588 903 ntBASIC13.96□□□□□ -0.17
SRRM4A7MD48 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 IL11-204ENST00000590625 1028 ntTSL 2 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 BNIP3P18-201ENST00000593976 575 ntBASIC13.96□□□□□ -0.17
SRRM4A7MD48 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 AP000550.4-202ENST00000639755 178 ntBASIC13.96□□□□□ -0.17
SRRM4A7MD48 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SRRM4A7MD48 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC13.96□□□□□ -0.17
SRRM4A7MD48 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
SRRM4A7MD48 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
SRRM4A7MD48 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
SRRM4A7MD48 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.96□□□□□ -0.18
SRRM4A7MD48 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.96□□□□□ -0.18
SRRM4A7MD48 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
SRRM4A7MD48 AC009336.1-201ENST00000608941 1553 ntBASIC13.96□□□□□ -0.18
SRRM4A7MD48 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.96□□□□□ -0.18
SRRM4A7MD48 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.95□□□□□ -0.18
SRRM4A7MD48 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SRRM4A7MD48 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SRRM4A7MD48 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC13.95□□□□□ -0.18
SRRM4A7MD48 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 AC005915.1-201ENST00000624912 2018 ntBASIC13.95□□□□□ -0.18
SRRM4A7MD48 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 AC124067.4-201ENST00000519691 2379 ntBASIC13.95□□□□□ -0.18
SRRM4A7MD48 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
SRRM4A7MD48 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SRRM4A7MD48 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.95□□□□□ -0.18
SRRM4A7MD48 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.95□□□□□ -0.18
SRRM4A7MD48 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SRRM4A7MD48 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms