Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 RNA5SP413-201ENST00000516373 109 ntBASIC16.45■□□□□ 0.22
AP4S1Q9Y587 AP003041.3-201ENST00000527151 707 ntBASIC16.45■□□□□ 0.22
AP4S1Q9Y587 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.45■□□□□ 0.22
AP4S1Q9Y587 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 PAUPAR-201ENST00000630360 2965 ntBASIC16.44■□□□□ 0.22
AP4S1Q9Y587 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
AP4S1Q9Y587 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.43■□□□□ 0.22
AP4S1Q9Y587 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms