Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 AC079776.2-201ENST00000641154 1609 ntBASIC18.6■□□□□ 0.57
SIX2Q9NPC8 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 AC124067.4-201ENST00000519691 2379 ntBASIC18.59■□□□□ 0.57
SIX2Q9NPC8 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX2Q9NPC8 GPR89P-201ENST00000407924 1495 ntBASIC18.58■□□□□ 0.57
SIX2Q9NPC8 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SIX2Q9NPC8 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SIX2Q9NPC8 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SIX2Q9NPC8 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
SIX2Q9NPC8 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SIX2Q9NPC8 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SIX2Q9NPC8 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SIX2Q9NPC8 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.57
SIX2Q9NPC8 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.58■□□□□ 0.57
SIX2Q9NPC8 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 ACTG1P4-201ENST00000425123 1122 ntBASIC18.58■□□□□ 0.56
SIX2Q9NPC8 SIGLEC30P-201ENST00000455569 941 ntBASIC18.58■□□□□ 0.56
SIX2Q9NPC8 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 AL591684.3-201ENST00000605187 298 ntBASIC18.58■□□□□ 0.56
SIX2Q9NPC8 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX2Q9NPC8 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 UPK3BP1-201ENST00000428678 509 ntBASIC18.57■□□□□ 0.56
SIX2Q9NPC8 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 KRT16P4-201ENST00000453883 522 ntBASIC18.57■□□□□ 0.56
SIX2Q9NPC8 AC132008.2-207ENST00000454517 770 ntBASIC18.57■□□□□ 0.56
SIX2Q9NPC8 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 FOSL1P1-201ENST00000511041 816 ntBASIC18.57■□□□□ 0.56
SIX2Q9NPC8 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 AP005117.1-201ENST00000584346 1413 ntBASIC18.57■□□□□ 0.56
SIX2Q9NPC8 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX2Q9NPC8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms