Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS11Q9H270 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS11Q9H270 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VPS11Q9H270 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS11Q9H270 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS11Q9H270 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS11Q9H270 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
VPS11Q9H270 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS11Q9H270 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS11Q9H270 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VPS11Q9H270 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS11Q9H270 STARP1-201ENST00000397973 869 ntBASIC17.48■□□□□ 0.39
VPS11Q9H270 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 AC093827.2-201ENST00000512654 315 ntBASIC17.48■□□□□ 0.39
VPS11Q9H270 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS11Q9H270 AL139327.4-201ENST00000612362 153 ntBASIC17.48■□□□□ 0.39
VPS11Q9H270 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VPS11Q9H270 AC046185.3-201ENST00000623228 1824 ntBASIC17.48■□□□□ 0.39
VPS11Q9H270 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS11Q9H270 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS11Q9H270 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
VPS11Q9H270 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.48■□□□□ 0.39
VPS11Q9H270 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VPS11Q9H270 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS11Q9H270 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS11Q9H270 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS11Q9H270 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS11Q9H270 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS11Q9H270 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 AL162727.3-201ENST00000635661 2787 ntBASIC17.47■□□□□ 0.39
VPS11Q9H270 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
VPS11Q9H270 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS11Q9H270 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS11Q9H270 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS11Q9H270 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS11Q9H270 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS11Q9H270 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS11Q9H270 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS11Q9H270 AC139887.4-201ENST00000607877 719 ntBASIC17.47■□□□□ 0.39
VPS11Q9H270 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS11Q9H270 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
VPS11Q9H270 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS11Q9H270 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VPS11Q9H270 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.47■□□□□ 0.39
VPS11Q9H270 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS11Q9H270 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS11Q9H270 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS11Q9H270 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS11Q9H270 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS11Q9H270 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS11Q9H270 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VPS11Q9H270 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.46■□□□□ 0.39
VPS11Q9H270 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS11Q9H270 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
VPS11Q9H270 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS11Q9H270 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS11Q9H270 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
VPS11Q9H270 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS11Q9H270 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS11Q9H270 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS11Q9H270 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS11Q9H270 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS11Q9H270 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms