Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 SRD5A3P1-201ENST00000603021 949 ntBASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 RN7SL828P-201ENST00000607615 303 ntBASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.32■□□□□ 0.36
COL25A1Q9BXS0 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 RN7SL818P-201ENST00000485099 259 ntBASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 IGHV3-52-201ENST00000519770 353 ntBASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 AC044860.1-202ENST00000559481 777 ntBASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 RN7SL725P-201ENST00000606439 259 ntBASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL25A1Q9BXS0 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 RN7SL769P-201ENST00000469386 295 ntBASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 AC009542.2-202ENST00000619004 1067 ntBASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL25A1Q9BXS0 AC100803.2-201ENST00000562459 1963 ntBASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 AL353705.2-201ENST00000428243 662 ntBASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL25A1Q9BXS0 AC005077.2-201ENST00000449786 690 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms