Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 AC233702.3-201ENST00000578656 1387 ntBASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 BX276092.5-203ENST00000456199 560 ntBASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 TPSP2-201ENST00000561760 610 ntBASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 AC018695.7-201ENST00000624587 2492 ntBASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.97■□□□□ 0.47
HERPUD2Q9BSE4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 TP73-AS1-210ENST00000637775 1455 ntBASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 ATP5G2P1-201ENST00000433580 426 ntBASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 BNIP3P18-201ENST00000593976 575 ntBASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HERPUD2Q9BSE4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
HERPUD2Q9BSE4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
HERPUD2Q9BSE4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
HERPUD2Q9BSE4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 HCG4P8-203ENST00000443049 980 ntBASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 AC111152.3-201ENST00000569699 673 ntBASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.95■□□□□ 0.46
HERPUD2Q9BSE4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HERPUD2Q9BSE4 AC148477.5-201ENST00000625164 1645 ntBASIC17.94■□□□□ 0.46
HERPUD2Q9BSE4 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HERPUD2Q9BSE4 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HERPUD2Q9BSE4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HERPUD2Q9BSE4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HERPUD2Q9BSE4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.94■□□□□ 0.46
HERPUD2Q9BSE4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HERPUD2Q9BSE4 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms