Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.55■□□□□ 0.08
USB1Q9BQ65 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 AKR1C7P-201ENST00000305623 895 ntBASIC15.55■□□□□ 0.08
USB1Q9BQ65 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 AC093909.1-201ENST00000504731 1122 ntBASIC15.55■□□□□ 0.08
USB1Q9BQ65 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 AF238378.1-201ENST00000526806 358 ntBASIC15.55■□□□□ 0.08
USB1Q9BQ65 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
USB1Q9BQ65 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
USB1Q9BQ65 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 AP005117.1-201ENST00000584346 1413 ntBASIC15.54■□□□□ 0.08
USB1Q9BQ65 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 COX5BP2-201ENST00000392354 334 ntBASIC15.54■□□□□ 0.08
USB1Q9BQ65 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 AC073648.2-201ENST00000510116 352 ntBASIC15.54■□□□□ 0.08
USB1Q9BQ65 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 AL139317.3-201ENST00000555969 898 ntTSL 2 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 AL136379.1-201ENST00000623471 2642 ntBASIC15.54■□□□□ 0.08
USB1Q9BQ65 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
USB1Q9BQ65 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
USB1Q9BQ65 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 AC135776.1-201ENST00000319817 2481 ntBASIC15.53■□□□□ 0.08
USB1Q9BQ65 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 AC007967.3-201ENST00000434308 558 ntBASIC15.53■□□□□ 0.08
USB1Q9BQ65 AC079781.3-201ENST00000449110 356 ntBASIC15.53■□□□□ 0.08
USB1Q9BQ65 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 MTDHP3-201ENST00000594186 672 ntBASIC15.53■□□□□ 0.08
USB1Q9BQ65 ACTG1P22-201ENST00000603793 1099 ntBASIC15.53■□□□□ 0.08
USB1Q9BQ65 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 AL139288.1-201ENST00000623748 933 ntBASIC15.53■□□□□ 0.08
USB1Q9BQ65 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
USB1Q9BQ65 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.53■□□□□ 0.08
USB1Q9BQ65 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms