Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 RNA5SP423-201ENST00000517127 109 ntBASIC16.96■□□□□ 0.31
VPS13AQ96RL7 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.95■□□□□ 0.3
VPS13AQ96RL7 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 HAUS4P1-201ENST00000406739 1145 ntBASIC16.95■□□□□ 0.3
VPS13AQ96RL7 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 AL139099.5-201ENST00000635274 300 ntBASIC16.95■□□□□ 0.3
VPS13AQ96RL7 AC068587.10-201ENST00000641210 219 ntBASIC16.95■□□□□ 0.3
VPS13AQ96RL7 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 INE1-201ENST00000456273 945 ntBASIC16.95■□□□□ 0.3
VPS13AQ96RL7 AC092658.1-201ENST00000505836 891 ntBASIC16.95■□□□□ 0.3
VPS13AQ96RL7 ALG1L8P-201ENST00000533887 760 ntBASIC16.95■□□□□ 0.3
VPS13AQ96RL7 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 SPDYE12P-201ENST00000618416 771 ntBASIC16.95■□□□□ 0.3
VPS13AQ96RL7 AL109936.8-201ENST00000641772 604 ntBASIC16.95■□□□□ 0.3
VPS13AQ96RL7 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13AQ96RL7 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 AL391825.1-201ENST00000457671 1364 ntBASIC16.94■□□□□ 0.3
VPS13AQ96RL7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 MIR4259-201ENST00000584466 101 ntBASIC16.94■□□□□ 0.3
VPS13AQ96RL7 REXO1L9P-201ENST00000604264 2108 ntBASIC16.94■□□□□ 0.3
VPS13AQ96RL7 AL590560.3-201ENST00000623350 461 ntBASIC16.94■□□□□ 0.3
VPS13AQ96RL7 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13AQ96RL7 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 WASH6P-202ENST00000359512 1437 ntBASIC16.93■□□□□ 0.3
VPS13AQ96RL7 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS13AQ96RL7 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms