Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC140Q96MF4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC140Q96MF4 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC140Q96MF4 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC140Q96MF4 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC140Q96MF4 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 LINC02012-201ENST00000608206 1725 ntBASIC13.42□□□□□ -0.26
CCDC140Q96MF4 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 EGFEM1P-202ENST00000431685 1563 ntBASIC13.42□□□□□ -0.26
CCDC140Q96MF4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 AKR1C7P-201ENST00000305623 895 ntBASIC13.42□□□□□ -0.26
CCDC140Q96MF4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 BX005266.1-201ENST00000473402 457 ntBASIC13.42□□□□□ -0.26
CCDC140Q96MF4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 IFNL4P1-201ENST00000607083 540 ntBASIC13.42□□□□□ -0.26
CCDC140Q96MF4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 AL139288.1-201ENST00000623748 933 ntBASIC13.42□□□□□ -0.26
CCDC140Q96MF4 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 AC004817.3-201ENST00000602957 2129 ntBASIC13.42□□□□□ -0.26
CCDC140Q96MF4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC140Q96MF4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 MTDHP3-201ENST00000594186 672 ntBASIC13.41□□□□□ -0.26
CCDC140Q96MF4 AC008608.2-201ENST00000606089 416 ntBASIC13.41□□□□□ -0.26
CCDC140Q96MF4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 AL355877.3-201ENST00000622820 899 ntBASIC13.41□□□□□ -0.26
CCDC140Q96MF4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC140Q96MF4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms