Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 ABALON-201ENST00000629058 1903 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 AC103564.2-201ENST00000432853 1299 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 RPS2P1-201ENST00000434010 821 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 HNRNPDP1-201ENST00000439535 754 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 OR7E14P-202ENST00000530490 1290 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 NKAPP1-205ENST00000585790 367 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 AL049840.3-201ENST00000602669 611 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 FAM215A-202ENST00000632077 792 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 AP000867.4-201ENST00000641616 219 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 AF228730.7-201ENST00000641842 219 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 AC018695.7-201ENST00000624587 2492 ntBASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 BICD1-207ENST00000551848 1962 ntBASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 MIR7706-201ENST00000613747 67 ntBASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CLIP3Q96DZ5 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 AC243591.1-201ENST00000452967 1364 ntBASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 AC092850.2-201ENST00000623821 2697 ntBASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms