Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRF1Q92994 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.43■□□□□ 0.86
BRF1Q92994 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.42■□□□□ 0.86
BRF1Q92994 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.42■□□□□ 0.86
BRF1Q92994 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.42■□□□□ 0.86
BRF1Q92994 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
BRF1Q92994 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.42■□□□□ 0.86
BRF1Q92994 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.42■□□□□ 0.86
BRF1Q92994 AP001269.4-201ENST00000609611 512 ntBASIC20.42■□□□□ 0.86
BRF1Q92994 AC092053.1-201ENST00000605787 1936 ntBASIC20.42■□□□□ 0.86
BRF1Q92994 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.42■□□□□ 0.86
BRF1Q92994 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
BRF1Q92994 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.42■□□□□ 0.86
BRF1Q92994 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.42■□□□□ 0.86
BRF1Q92994 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRF1Q92994 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
BRF1Q92994 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 LINC02012-201ENST00000608206 1725 ntBASIC20.41■□□□□ 0.86
BRF1Q92994 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
BRF1Q92994 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
BRF1Q92994 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
BRF1Q92994 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
BRF1Q92994 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 SPDYE21P-201ENST00000413323 827 ntBASIC20.41■□□□□ 0.86
BRF1Q92994 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
BRF1Q92994 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.41■□□□□ 0.86
BRF1Q92994 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.41■□□□□ 0.86
BRF1Q92994 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.41■□□□□ 0.86
BRF1Q92994 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.41■□□□□ 0.86
BRF1Q92994 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.41■□□□□ 0.86
BRF1Q92994 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
BRF1Q92994 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.41■□□□□ 0.86
BRF1Q92994 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
BRF1Q92994 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.41■□□□□ 0.86
BRF1Q92994 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRF1Q92994 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.41■□□□□ 0.86
BRF1Q92994 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.4■□□□□ 0.86
BRF1Q92994 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.4■□□□□ 0.86
BRF1Q92994 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.4■□□□□ 0.86
BRF1Q92994 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
BRF1Q92994 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.4■□□□□ 0.86
BRF1Q92994 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
BRF1Q92994 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.4■□□□□ 0.86
BRF1Q92994 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
BRF1Q92994 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
BRF1Q92994 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.4■□□□□ 0.86
BRF1Q92994 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
BRF1Q92994 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRF1Q92994 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRF1Q92994 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRF1Q92994 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
BRF1Q92994 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRF1Q92994 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRF1Q92994 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRF1Q92994 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRF1Q92994 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
BRF1Q92994 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 AP005117.1-201ENST00000584346 1413 ntBASIC20.39■□□□□ 0.85
BRF1Q92994 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
BRF1Q92994 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms