Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
ERCC4Q92889 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.71■□□□□ 0.75
ERCC4Q92889 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.71■□□□□ 0.75
ERCC4Q92889 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.71■□□□□ 0.75
ERCC4Q92889 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.71■□□□□ 0.75
ERCC4Q92889 AL139327.4-201ENST00000612362 153 ntBASIC19.71■□□□□ 0.75
ERCC4Q92889 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
ERCC4Q92889 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
ERCC4Q92889 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.71■□□□□ 0.75
ERCC4Q92889 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ERCC4Q92889 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.7■□□□□ 0.74
ERCC4Q92889 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
ERCC4Q92889 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.7■□□□□ 0.74
ERCC4Q92889 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.7■□□□□ 0.74
ERCC4Q92889 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.7■□□□□ 0.74
ERCC4Q92889 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.7■□□□□ 0.74
ERCC4Q92889 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.7■□□□□ 0.74
ERCC4Q92889 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
ERCC4Q92889 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
ERCC4Q92889 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.7■□□□□ 0.74
ERCC4Q92889 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
ERCC4Q92889 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ERCC4Q92889 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
ERCC4Q92889 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.69■□□□□ 0.74
ERCC4Q92889 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 AC016396.2-201ENST00000562575 1417 ntBASIC19.69■□□□□ 0.74
ERCC4Q92889 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 RNF152P1-201ENST00000397754 604 ntBASIC19.69■□□□□ 0.74
ERCC4Q92889 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.69■□□□□ 0.74
ERCC4Q92889 AC104076.2-201ENST00000448912 469 ntBASIC19.69■□□□□ 0.74
ERCC4Q92889 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.69■□□□□ 0.74
ERCC4Q92889 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.69■□□□□ 0.74
ERCC4Q92889 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
ERCC4Q92889 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.69■□□□□ 0.74
ERCC4Q92889 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
ERCC4Q92889 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ERCC4Q92889 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
ERCC4Q92889 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.68■□□□□ 0.74
ERCC4Q92889 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 AC008741.2-201ENST00000612792 3115 ntBASIC19.68■□□□□ 0.74
ERCC4Q92889 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
ERCC4Q92889 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.68■□□□□ 0.74
ERCC4Q92889 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
ERCC4Q92889 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.68■□□□□ 0.74
ERCC4Q92889 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ERCC4Q92889 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ERCC4Q92889 AK4P3-201ENST00000418260 669 ntBASIC19.68■□□□□ 0.74
ERCC4Q92889 AC096633.1-201ENST00000422446 749 ntBASIC19.68■□□□□ 0.74
ERCC4Q92889 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms