Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ATG4AQ8WYN0 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 MYCLP1-201ENST00000372451 1075 ntBASIC18■□□□□ 0.47
ATG4AQ8WYN0 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 AL353801.3-201ENST00000609898 542 ntBASIC18■□□□□ 0.47
ATG4AQ8WYN0 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
ATG4AQ8WYN0 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
ATG4AQ8WYN0 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 KRT8P10-201ENST00000450021 1447 ntBASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 DUX4L26-201ENST00000489078 1255 ntBASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
ATG4AQ8WYN0 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 RCN1P1-201ENST00000400413 996 ntBASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 AC091607.1-201ENST00000490318 1060 ntBASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms