Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 EGFEM1P-202ENST00000431685 1563 ntBASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 SLC25A1P1-201ENST00000528351 927 ntBASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHROOM3Q8TF72 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.64■□□□□ 0.42
SHROOM3Q8TF72 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.64■□□□□ 0.42
SHROOM3Q8TF72 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.64■□□□□ 0.42
SHROOM3Q8TF72 AC021087.4-201ENST00000563761 564 ntBASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 AC091304.2-201ENST00000564639 760 ntBASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 AC087163.2-201ENST00000457299 853 ntBASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 MIR7706-201ENST00000613747 67 ntBASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHROOM3Q8TF72 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 SIGLEC30P-201ENST00000455569 941 ntBASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms