Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC092933.1-201ENST00000393644 945 ntBASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 SSH2-211ENST00000590153 570 ntTSL 4 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 TMEM261P1-201ENST00000604899 340 ntBASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 SPDYE12P-201ENST00000618416 771 ntBASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 BCYRN1-201ENST00000418539 200 ntBASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 AC087163.2-201ENST00000457299 853 ntBASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 MIR4515-201ENST00000584082 81 ntBASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SMC1BQ8NDV3 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.41■□□□□ 0.86
SMC1BQ8NDV3 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 AP000842.3-202ENST00000569238 1080 ntBASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 AL138828.2-201ENST00000615812 383 ntBASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 MIR6787-201ENST00000616675 61 ntBASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 PFAS-212ENST00000625942 396 ntTSL 5 BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC1BQ8NDV3 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms