Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 CHCHD2P8-201ENST00000429873 447 ntBASIC19.79■□□□□ 0.76
ATL3Q6DD88 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATL3Q6DD88 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.79■□□□□ 0.76
ATL3Q6DD88 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 KLF4P1-201ENST00000412782 1185 ntBASIC19.78■□□□□ 0.76
ATL3Q6DD88 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 AL121672.3-201ENST00000608644 468 ntBASIC19.78■□□□□ 0.76
ATL3Q6DD88 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.78■□□□□ 0.76
ATL3Q6DD88 AL121956.5-201ENST00000625261 221 ntBASIC19.78■□□□□ 0.76
ATL3Q6DD88 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATL3Q6DD88 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
ATL3Q6DD88 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 AL603756.1-201ENST00000606511 2163 ntBASIC19.77■□□□□ 0.76
ATL3Q6DD88 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms