Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 FAM86C2P-203ENST00000528684 1004 ntBASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 AL512356.2-201ENST00000546955 174 ntBASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 RAB34-224ENST00000636513 888 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC88AQ3V6T2 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 RN7SL589P-201ENST00000481268 310 ntBASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 AC107918.2-201ENST00000530817 355 ntBASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC88AQ3V6T2 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC88AQ3V6T2 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC88AQ3V6T2 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 SPDYE7P-202ENST00000420373 878 ntBASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 ATP5G2P4-201ENST00000442175 420 ntBASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 AL358472.5-202ENST00000641448 1267 ntBASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 AC100757.3-201ENST00000622361 1406 ntBASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 TSSK5P-201ENST00000423978 907 ntBASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 AC026150.2-201ENST00000564693 1156 ntBASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 SSH2-211ENST00000590153 570 ntTSL 4 BASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 AC027307.3-201ENST00000594262 1100 ntBASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 AL590560.3-201ENST00000623350 461 ntBASIC21.01■□□□□ 0.95
CCDC88AQ3V6T2 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms