Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 AC104109.2-201ENST00000602919 1418 ntBASIC22.67■■□□□ 1.22
RIPK4P57078 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RIPK4P57078 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RIPK4P57078 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
RIPK4P57078 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC22.67■■□□□ 1.22
RIPK4P57078 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RIPK4P57078 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC22.67■■□□□ 1.22
RIPK4P57078 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
RIPK4P57078 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RIPK4P57078 SLC25A1P3-201ENST00000395415 828 ntBASIC22.67■■□□□ 1.22
RIPK4P57078 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC22.67■■□□□ 1.22
RIPK4P57078 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RIPK4P57078 RPS15P9-201ENST00000494093 319 ntBASIC22.67■■□□□ 1.22
RIPK4P57078 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC22.67■■□□□ 1.22
RIPK4P57078 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RIPK4P57078 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC22.67■■□□□ 1.22
RIPK4P57078 AC145285.3-201ENST00000564603 959 ntBASIC22.67■■□□□ 1.22
RIPK4P57078 AC106730.1-201ENST00000566722 1090 ntBASIC22.67■■□□□ 1.22
RIPK4P57078 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC22.67■■□□□ 1.22
RIPK4P57078 PGM5P2-202ENST00000637225 1043 ntBASIC22.67■■□□□ 1.22
RIPK4P57078 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
RIPK4P57078 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RIPK4P57078 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC22.67■■□□□ 1.22
RIPK4P57078 AC141586.5-201ENST00000624546 2050 ntBASIC22.67■■□□□ 1.22
RIPK4P57078 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC22.66■■□□□ 1.22
RIPK4P57078 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
RIPK4P57078 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC22.66■■□□□ 1.22
RIPK4P57078 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC22.66■■□□□ 1.22
RIPK4P57078 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC22.66■■□□□ 1.22
RIPK4P57078 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
RIPK4P57078 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC22.66■■□□□ 1.22
RIPK4P57078 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC22.66■■□□□ 1.22
RIPK4P57078 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC22.66■■□□□ 1.22
RIPK4P57078 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC22.66■■□□□ 1.22
RIPK4P57078 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
RIPK4P57078 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RIPK4P57078 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC22.66■■□□□ 1.22
RIPK4P57078 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC22.66■■□□□ 1.22
RIPK4P57078 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
RIPK4P57078 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC22.65■■□□□ 1.22
RIPK4P57078 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC22.65■■□□□ 1.22
RIPK4P57078 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
RIPK4P57078 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC22.65■■□□□ 1.22
RIPK4P57078 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 AC009947.1-201ENST00000444350 727 ntBASIC22.65■■□□□ 1.22
RIPK4P57078 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC22.65■■□□□ 1.22
RIPK4P57078 AC034105.1-201ENST00000563488 319 ntBASIC22.65■■□□□ 1.22
RIPK4P57078 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC22.65■■□□□ 1.22
RIPK4P57078 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
RIPK4P57078 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC22.65■■□□□ 1.22
RIPK4P57078 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
RIPK4P57078 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC22.65■■□□□ 1.22
RIPK4P57078 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC22.65■■□□□ 1.22
RIPK4P57078 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC22.65■■□□□ 1.22
RIPK4P57078 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RIPK4P57078 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
RIPK4P57078 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.22
RIPK4P57078 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RIPK4P57078 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC22.64■■□□□ 1.22
RIPK4P57078 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC22.64■■□□□ 1.22
RIPK4P57078 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC22.64■■□□□ 1.22
RIPK4P57078 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC22.64■■□□□ 1.21
RIPK4P57078 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 AL671883.3-201ENST00000603274 991 ntBASIC22.64■■□□□ 1.21
RIPK4P57078 AC008667.4-201ENST00000607370 168 ntBASIC22.64■■□□□ 1.21
RIPK4P57078 Z83851.2-201ENST00000609564 659 ntBASIC22.64■■□□□ 1.21
RIPK4P57078 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 AL805961.1-202ENST00000641562 540 ntBASIC22.64■■□□□ 1.21
RIPK4P57078 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC22.64■■□□□ 1.21
RIPK4P57078 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 AC116353.5-201ENST00000638148 1699 ntBASIC22.64■■□□□ 1.21
RIPK4P57078 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC22.64■■□□□ 1.21
RIPK4P57078 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
RIPK4P57078 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC22.64■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms